Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
ESCA rs1005046 chr21:45582711 C/A 7.1E-5 180 7.57 13.57 13.4 KM Plot
ESCA rs10072700 chr5:131816903 A/C 3.54E-7 184 13.33 13.63 0.37 KM Plot
ESCA rs10086801 chr8:120878383 G/T 6.83E-6 184 12.9 18.58 3.6 KM Plot
ESCA rs10099093 chr8:2452704 G/A 1.71E-9 178 13.33 13.3 2.93 KM Plot
ESCA rs1011596 chr6:146076433 A/G 9.94E-5 184 13.57 13.12 10.1 KM Plot
ESCA rs10149146 chr14:102901201 A/G 8.84E-5 176 12.77 13.62 12.12 KM Plot
ESCA rs10166257 chr2:141604286 C/T 4.12E-5 184 13.82 12.33 13.4 KM Plot
ESCA rs10223879 chr6:145688962 C/T 2.23E-5 181 13.5 13.22 8.1 KM Plot
ESCA rs10404703 chr19:5063674 C/T 3.66E-6 181 13.1 14.57 2.93 KM Plot
ESCA rs10444447 chr12:123764083 C/T 2.08E-7 182 13.1 19.6 2.7 KM Plot
ESCA rs10444448 chr12:123764169 A/G 2.08E-7 182 13.1 19.6 2.7 KM Plot
ESCA rs1051760 chr7:150070630 A/G 4.62E-6 179 12.8 15.4 12.4 KM Plot
ESCA rs1051764 chr7:150070663 T/C 4.62E-6 179 12.8 15.4 12.4 KM Plot
ESCA rs1051823 chr7:150070814 G/A 1.43E-5 178 12.8 15.4 12.45 KM Plot
ESCA rs10520157 chr4:170533736 G/T 2.68E-5 178 13.35 13.6 3.73 KM Plot